PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 339622
Common NameARALYDRAFT_339622
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 633aa    MW: 72789.2 Da    PI: 4.8233
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
339622genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016603622221
              EETTTTEEESSHHHHHHHHH CS
  zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
              +C  Cg+ F ++  L++H+ 
   339622 603 ECDRCGEEFESRTKLHKHLA 622
              5*****************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.83E-226109IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1106.2E-23880IPR001623DnaJ domain
SMARTSM002716.8E-221073IPR001623DnaJ domain
CDDcd062579.76E-161170IPR001623DnaJ domain
PROSITE profilePS5007619.3081181IPR001623DnaJ domain
PfamPF002262.8E-201278IPR001623DnaJ domain
PRINTSPR006251.4E-141331IPR001623DnaJ domain
PRINTSPR006251.4E-143146IPR001623DnaJ domain
PRINTSPR006251.4E-145373IPR001623DnaJ domain
PROSITE patternPS0063605877IPR018253DnaJ domain, conserved site
SuperFamilySSF576678.48E-15299354No hitNo description
SMARTSM004514.5E-8309343IPR003604Zinc finger, U1-type
PfamPF121712.4E-10311337IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.73312336IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280314336IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723602631IPR007087Zinc finger, C2H2
SMARTSM003555.2602626IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280604626IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MASSSRSEKR CHYEVLGISK ESSPDEIRSS YRRLALQRHP DKLMKAGGLS EAEATAQFQE  60
LVHAYEVLSD PKERAWYDSH RSQILFADHS SAGGSKSGGM PGGSVPDLFA FFTPTVYSGY  120
SDIGKGFYKV YYDVFNSVYL NEIKFARTLG LRMDSVREAP IMGNLESPYA QVTAFYNYWL  180
GFSTVMDFCW VDEYDVMAGP NRKSRRLMEE ENKKVRKKAK REYNETVRGL AEFVKKRDKR  240
VIDMMVKKNA EMEKKKEEER ERKKKMEKER LERAMNYEEP EWAKAQEGEE EGAGFNVLEE  300
EDDDAKRKNE QLYCIVCSKK FKSEKQWRNH EQSKKHKEKV AELRESFTDY EEEIEEEETD  360
GPLKPPESVE ELHEKLQEEL NIDDEENDVE DEVVGEADET DEEYFVAEED MKGSSESEDE  420
DDEMTLLKKM VSGQKKKRKN AVSKEEDEIE VEIESDTAEF SEVDYQKNTG RNKEAKEERN  480
KQNAGKDMAD DTSKVQVPGD DGNPDENVNA TDSASGAFED SQKDEANSME YDNRKSTGRR  540
RRSKKGKDKN NQGELMEKSS EADDTPYVNR DMEAQDYKKA PRSKKSTRGM KTKGTTKKNS  600
SNECDRCGEE FESRTKLHKH LADSGHATVK SR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bq0_A6e-12980268DNAJ
1xbl_A6e-12980268DNAJ
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212220KKVRKKAKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0205790.0AC020579.5 Arabidopsis thaliana chromosome 1 BAC F1O17 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887534.10.0hypothetical protein ARALYDRAFT_339622
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLD7KS040.0D7KS04_ARALL; Putative uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_20017210.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.10.0DNAJ heat shock N-terminal domain-containing protein